STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_1703PFAM: protein of unknown function DUF820; KEGG: rrs:RoseRS_1413 protein of unknown function DUF820. (184 aa)    
Predicted Functional Partners:
Rcas_0813
PFAM: protein of unknown function DUF820; KEGG: rrs:RoseRS_4461 protein of unknown function DUF820.
  
     0.775
Rcas_1336
PFAM: protein of unknown function DUF820; KEGG: rrs:RoseRS_3553 protein of unknown function DUF820.
  
     0.775
Rcas_0134
PFAM: protein of unknown function DUF820; KEGG: rrs:RoseRS_4336 protein of unknown function DUF820.
  
     0.774
Rcas_1335
PFAM: protein of unknown function DUF820; KEGG: rrs:RoseRS_3554 protein of unknown function DUF820.
  
     0.774
Rcas_2784
PFAM: protein of unknown function DUF820; KEGG: rrs:RoseRS_4336 protein of unknown function DUF820.
  
     0.774
Rcas_3390
Response regulator receiver protein; KEGG: ava:Ava_2609 protein of unknown function DUF820.
  
     0.763
Rcas_4145
KEGG: pth:PTH_2559 uncharacterized protein conserved in cyanobacteria.
  
     0.637
Rcas_2886
PFAM: protein of unknown function DUF820; KEGG: rba:RB8456 hypothetical protein.
  
     0.501
Rcas_1702
PFAM: protein of unknown function DUF820; KEGG: rrs:RoseRS_1412 protein of unknown function DUF820.
 
    
0.494
Rcas_1701
PFAM: glycosyl transferase family 2; KEGG: rrs:RoseRS_1414 glycosyl transferase, family 2.
       0.475
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.