STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_1713KEGG: pna:Pnap_4710 hypothetical protein. (452 aa)    
Predicted Functional Partners:
Rcas_4287
PFAM: protein of unknown function DUF814; Fibronectin-binding A domain protein; KEGG: rrs:RoseRS_3600 fibronectin-binding A domain protein.
  
  
 0.705
Rcas_4244
KEGG: rrs:RoseRS_2592 hypothetical protein.
  
  
 0.627
Rcas_1048
Hypothetical protein; KEGG: mgi:Mflv_5589 aminoglycoside nucleotidyltransferase.
  
     0.573
Rcas_3351
KEGG: rrs:RoseRS_4063 hypothetical protein.
  
     0.514
Rcas_1714
Hypothetical protein.
       0.504
Rcas_1254
PFAM: Myo-inositol catabolism IolB domain protein; KEGG: rrs:RoseRS_0499 myo-inositol catabolism IolB domain protein.
   
    0.497
Rcas_0146
Transposase and inactivated derivatives-like protein; KEGG: noc:Noc_0070 transposase.
  
     0.491
Rcas_3082
KEGG: rrs:RoseRS_2397 hypothetical protein.
  
    0.442
Rcas_4104
PFAM: GCN5-related N-acetyltransferase; KEGG: rrs:RoseRS_3293 GCN5-related N-acetyltransferase.
 
     0.406
Rcas_0405
PFAM: transposase IS4 family protein; KEGG: rrs:RoseRS_0444 transposase, IS4 family protein.
  
     0.403
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.