STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_1723PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rrs:RoseRS_3069 ABC transporter related. (263 aa)    
Predicted Functional Partners:
Rcas_1722
PFAM: ABC-3 protein; KEGG: rrs:RoseRS_3068 ABC-3 protein.
 0.996
Rcas_1724
PFAM: periplasmic solute binding protein; KEGG: rrs:RoseRS_3070 periplasmic solute binding protein; Belongs to the bacterial solute-binding protein 9 family.
 
 
 0.996
Rcas_1721
Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; ABC-3 protein; KEGG: rrs:RoseRS_3067 ABC-3 protein.
 0.995
Rcas_1589
ABC-3 protein; PFAM: transport system permease protein; ABC-3 protein; KEGG: rrs:RoseRS_1256 ABC-3 protein.
 
 0.976
Rcas_1591
PFAM: periplasmic solute binding protein; KEGG: rrs:RoseRS_1258 periplasmic solute binding protein; Belongs to the bacterial solute-binding protein 9 family.
 
  
 0.957
Rcas_3902
KEGG: mfa:Mfla_2613 hypothetical protein.
  
 
 0.862
Rcas_1126
PFAM: protein of unknown function DUF214; KEGG: rrs:RoseRS_3757 protein of unknown function DUF214.
 
    0.643
Rcas_1649
Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: rrs:RoseRS_1293 ferric uptake regulator, Fur family; Belongs to the Fur family.
  
  
 0.485
Rcas_3895
Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: rrs:RoseRS_0593 ferric uptake regulator, Fur family; Belongs to the Fur family.
  
  
 0.485
Rcas_3901
Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: nca:Noca_1934 ferric-uptake regulator; Belongs to the Fur family.
  
  
 0.485
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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