STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_1746PFAM: lipolytic protein G-D-S-L family; KEGG: rrs:RoseRS_2123 lipolytic enzyme, G-D-S-L family. (238 aa)    
Predicted Functional Partners:
Rcas_2401
TIGRFAM: polymorphic outer membrane protein; SMART: Parallel beta-helix repeat; KEGG: rba:RB4375 probable extracellular nuclease.
  
 
 0.896
Rcas_2874
TIGRFAM: polymorphic outer membrane protein; PFAM: Polymorphic membrane protein Chlamydia; KEGG: rba:RB1661 hypothetical protein.
  
 
 0.871
Rcas_2186
KEGG: rrs:RoseRS_1804 hypothetical protein.
 
   
 0.633
Rcas_1745
PFAM: peptidase S16 lon domain protein; KEGG: rrs:RoseRS_2124 peptidase S16, lon domain protein.
  
  
 0.618
Rcas_3784
PFAM: N-acylglucosamine 2-epimerase; KEGG: rrs:RoseRS_1977 N-acylglucosamine 2-epimerase.
 
     0.563
Rcas_1747
KEGG: rrs:RoseRS_2122 hypothetical protein.
     
 0.528
Rcas_1066
PFAM: YdjC family protein; KEGG: rrs:RoseRS_0422 YdjC family protein.
 
   
 0.473
Rcas_2990
PFAM: protein of unknown function DUF255; KEGG: rrs:RoseRS_2279 protein of unknown function DUF255.
   
 
 0.467
Rcas_2743
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rrs:RoseRS_2675 hypothetical protein.
  
  
 0.444
Rcas_2755
Oxidoreductase domain protein; PFAM: Semialdehyde dehydrogenase NAD - binding; oxidoreductase domain protein; Oxidoreductase domain; KEGG: rrs:RoseRS_2513 oxidoreductase domain protein.
 
     0.426
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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