STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_17785-oxoprolinase (ATP-hydrolyzing); PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: rrs:RoseRS_2091 5-oxoprolinase (ATP-hydrolyzing). (715 aa)    
Predicted Functional Partners:
Rcas_1968
5-oxoprolinase (ATP-hydrolyzing); PFAM: Hydantoinase B/oxoprolinase; KEGG: rrs:RoseRS_2708 5-oxoprolinase (ATP-hydrolyzing).
 
 0.993
Rcas_3492
5-oxoprolinase (ATP-hydrolyzing); PFAM: Hydantoinase B/oxoprolinase; KEGG: nar:Saro_0175 5-oxoprolinase (ATP-hydrolyzing).
 
 0.993
Rcas_1776
PFAM: Acetone carboxylase gamma subunit; KEGG: rrs:RoseRS_2093 acetone carboxylase gamma subunit-like protein.
 
 
 
 0.988
Rcas_1777
PFAM: Hydantoinase B/oxoprolinase; KEGG: rrs:RoseRS_2092 hydantoinase B/oxoprolinase.
 
 
 0.977
Rcas_3029
KEGG: rrs:RoseRS_2052 hypothetical protein.
  
 
 0.748
Rcas_1779
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: rrs:RoseRS_2090 helix-turn-helix-domain containing protein, AraC type.
 
     0.607
Rcas_1775
PFAM: AMP-dependent synthetase and ligase; KEGG: rrs:RoseRS_2094 AMP-dependent synthetase and ligase.
       0.503
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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