STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_1796KEGG: rrs:RoseRS_2621 hypothetical protein. (272 aa)    
Predicted Functional Partners:
Rcas_1797
KEGG: rrs:RoseRS_2620 hypothetical protein.
       0.791
purL
Phosphoribosylformylglycinamidine synthase II; Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP- dependent manner. PurS interacts with PurQ and PurL and is thought to assist [...]
       0.783
Rcas_2726
PFAM: Tetratricopeptide TPR_4; KEGG: rrs:RoseRS_2658 glycosyl transferase, family 39.
  
     0.712
Rcas_1794
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rrs:RoseRS_2623 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.701
Rcas_3703
SMART: Dystroglycan-type cadherin domain protein; PA14-related domain protein; KEGG: rso:RS05070 putative hemagglutinin/hemolysin-related protein.
  
     0.701
Rcas_2574
SMART: LamG domain protein jellyroll fold domain protein; KEGG: ana:alr7304 similar to hlyA.
  
     0.616
Rcas_2727
PFAM: glycosyl transferase family 39; KEGG: rrs:RoseRS_2659 glycosyl transferase, family 39.
  
     0.597
Rcas_1971
PFAM: phospholipid/glycerol acyltransferase; KEGG: rrs:RoseRS_2705 phospholipid/glycerol acyltransferase.
  
     0.596
Rcas_0820
PFAM: iron permease FTR1; KEGG: rrs:RoseRS_4468 iron permease FTR1.
  
     0.582
Rcas_2246
Hypothetical protein; KEGG: aav:Aave_2156 polymorphic outer membrane protein.
  
     0.571
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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