STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_1806KEGG: rrs:RoseRS_2611 hypothetical protein. (125 aa)    
Predicted Functional Partners:
Rcas_3295
KEGG: rrs:RoseRS_1862 hypothetical protein.
   
 
 0.824
atpE
ATP synthase F0, C subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.
  
 
 0.796
coaD
Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.
       0.685
Rcas_1805
PFAM: protein of unknown function DUF177; KEGG: rrs:RoseRS_2612 protein of unknown function DUF177.
       0.656
Rcas_3718
KEGG: rrs:RoseRS_3230 hypothetical protein.
  
     0.632
rpmF
TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: rrs:RoseRS_2613 ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.
       0.624
Rcas_1808
TIGRFAM: putative methyltransferase; PFAM: conserved hypothetical protein; KEGG: rrs:RoseRS_2609 putative methyltransferase.
       0.564
Rcas_2061
FHA domain containing protein; PFAM: Forkhead-associated protein; KEGG: rrs:RoseRS_1781 FHA domain containing protein.
  
     0.507
Rcas_2690
PFAM: Lytic transglycosylase catalytic; Tetratricopeptide TPR_4; SMART: Tetratricopeptide domain protein; KEGG: rrs:RoseRS_2641 lytic transglycosylase, catalytic.
  
     0.443
fabH
3-oxoacyl-(acyl-carrier-protein) synthase III; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched-chain and/or straight-chain of fatty acids; Belongs to the thiolase-like superfamily. FabH family.
       0.427
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.