STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_1859PFAM: Amidohydrolase 3; KEGG: rrs:RoseRS_2586 amidohydrolase 3. (549 aa)    
Predicted Functional Partners:
Rcas_1858
PFAM: protein of unknown function DUF214; KEGG: rrs:RoseRS_2585 protein of unknown function DUF214.
       0.781
Rcas_0939
PFAM: beta-lactamase; KEGG: rrs:RoseRS_4280 beta-lactamase; Belongs to the class-A beta-lactamase family.
 
     0.458
Rcas_1860
Molybdenum cofactor synthesis domain; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.
       0.452
Rcas_1375
PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; dienelactone hydrolase; WD40 domain protein beta Propeller; KEGG: rrs:RoseRS_3533 peptidase S9, prolyl oligopeptidase active site domain protein.
 
     0.415
Rcas_2208
Serine-type D-Ala-D-Ala carboxypeptidase; PFAM: beta-lactamase; KEGG: rrs:RoseRS_2638 beta-lactamase; Belongs to the class-A beta-lactamase family.
 
     0.409
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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