STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_1866PFAM: carbohydrate kinase FGGY; KEGG: rrs:RoseRS_2596 carbohydrate kinase, FGGY. (520 aa)    
Predicted Functional Partners:
xylA
KEGG: rrs:RoseRS_2884 xylose isomerase; TIGRFAM: xylose isomerase; PFAM: Xylose isomerase domain protein TIM barrel; Belongs to the xylose isomerase family.
 
 
 0.947
Rcas_2057
PFAM: ribulose-phosphate 3-epimerase; KEGG: rrs:RoseRS_1777 ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
 
  
 0.930
Rcas_0103
PFAM: carbohydrate kinase FGGY; KEGG: rrs:RoseRS_4551 carbohydrate kinase, FGGY.
  
  
 
0.928
xylB
TIGRFAM: xylulokinase; PFAM: carbohydrate kinase FGGY; KEGG: rrs:RoseRS_2886 xylulokinase.
  
  
 
0.925
Rcas_4091
PFAM: protein of unknown function DUF1498; KEGG: rrs:RoseRS_0888 protein of unknown function DUF1498.
    
  0.907
Rcas_1867
PFAM: aminotransferase class V; Pyridoxal-dependent decarboxylase; KEGG: rrs:RoseRS_2597 pyridoxal-dependent decarboxylase.
 
 
 0.848
Rcas_3456
PFAM: protein of unknown function DUF718; KEGG: rrs:RoseRS_2729 protein of unknown function DUF718.
  
  
 0.767
Rcas_1865
PFAM: protein of unknown function DUF820; KEGG: rrs:RoseRS_2595 protein of unknown function DUF820.
       0.762
Rcas_1864
PFAM: amine oxidase; KEGG: rrs:RoseRS_2594 amine oxidase.
  
  
 0.739
rhaA
PFAM: L-rhamnose isomerase; KEGG: rrs:RoseRS_2730 L-rhamnose isomerase; Belongs to the rhamnose isomerase family.
  
  
 0.680
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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