Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Rcas_1900 | Rcas_3848 | Rcas_1900 | Rcas_3848 | PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: rrs:RoseRS_2982 mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein. | PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: mlo:mll7085 2-oxo-3-deoxygalactonate 6-phosphate aldolase and galactonate dehydratase. | 0.689 |
Rcas_1900 | Rcas_3855 | Rcas_1900 | Rcas_3855 | PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: rrs:RoseRS_2982 mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein. | PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: csc:Csac_2739 mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein. | 0.697 |
Rcas_1900 | menD | Rcas_1900 | Rcas_4217 | PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: rrs:RoseRS_2982 mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein. | 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase; Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2- succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). | 0.461 |
Rcas_3848 | Rcas_1900 | Rcas_3848 | Rcas_1900 | PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: mlo:mll7085 2-oxo-3-deoxygalactonate 6-phosphate aldolase and galactonate dehydratase. | PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: rrs:RoseRS_2982 mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein. | 0.689 |
Rcas_3855 | Rcas_1900 | Rcas_3855 | Rcas_1900 | PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: csc:Csac_2739 mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein. | PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: rrs:RoseRS_2982 mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein. | 0.697 |
menD | Rcas_1900 | Rcas_4217 | Rcas_1900 | 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase; Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2- succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). | PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: rrs:RoseRS_2982 mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein. | 0.461 |