Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Rcas_1920PFAM: DNA polymerase beta domain protein region; KEGG: rrs:RoseRS_3041 DNA polymerase, beta domain protein region. (116 aa)    
Predicted Functional Partners:
Rcas_1919
PFAM: HEPN domain protein; KEGG: rrs:RoseRS_3040 HEPN domain protein.
 
 
   0.949
Rcas_0575
PFAM: HEPN domain protein; KEGG: rrs:RoseRS_3847 HEPN domain protein.
 
 
   0.787
Rcas_0573
PFAM: HEPN domain protein; KEGG: rrs:RoseRS_3847 HEPN domain protein.
 
 
   0.786
Rcas_2346
PFAM: HEPN domain protein; KEGG: rrs:RoseRS_3040 HEPN domain protein.
 
 
   0.786
Rcas_3921
PFAM: HEPN domain protein; KEGG: rrs:RoseRS_1451 HEPN domain protein.
 
 
   0.786
Rcas_1958
PFAM: HEPN domain protein; KEGG: gme:Gmet_0217 HEPN.
 
 
   0.778
Rcas_1921
Hypothetical protein.
       0.773
Rcas_1922
KEGG: rrs:RoseRS_1219 hypothetical protein.
       0.773
Rcas_1302
PFAM: HEPN domain protein; KEGG: rrs:RoseRS_2192 HEPN domain protein.
 
 
   0.665
Rcas_1918
Hypothetical protein.
       0.613
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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