STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_1934PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rrs:RoseRS_2964 NADH:flavin oxidoreductase/NADH oxidase. (691 aa)    
Predicted Functional Partners:
Rcas_3166
PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: rrs:RoseRS_2299 electron transfer flavoprotein beta-subunit.
  
 
 0.857
Rcas_3596
PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: rrs:RoseRS_0956 electron transfer flavoprotein beta-subunit.
  
 
 0.857
Rcas_2527
TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: rrs:RoseRS_1818 thioredoxin.
  
 
 0.799
Rcas_3336
TIGRFAM: thioredoxin; PFAM: glutaredoxin 2; Redoxin domain protein; Thioredoxin domain; KEGG: rrs:RoseRS_1006 thioredoxin.
  
 
 0.799
Rcas_4105
TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: rrs:RoseRS_3294 thioredoxin; Belongs to the thioredoxin family.
  
 
 0.799
Rcas_3167
PFAM: Electron transfer flavoprotein alpha/beta-subunit; Electron transfer flavoprotein alpha subunit; KEGG: rrs:RoseRS_2298 electron transfer flavoprotein, alpha subunit.
   
 
 0.782
Rcas_3597
PFAM: Electron transfer flavoprotein alpha/beta-subunit; Electron transfer flavoprotein alpha subunit; KEGG: rrs:RoseRS_0957 electron transfer flavoprotein, alpha subunit.
   
 
 0.782
Rcas_0934
PFAM: RNA binding S1 domain protein; KEGG: rrs:RoseRS_4287 RNA binding S1 domain protein.
  
    0.776
Rcas_1422
PFAM: RNA binding S1 domain protein; KEGG: rrs:RoseRS_3968 RNA binding S1 domain protein.
  
    0.776
Rcas_2015
PFAM: RNA binding S1 domain protein; KEGG: rrs:RoseRS_1730 RNA binding S1 domain protein.
  
    0.776
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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