STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_1955PFAM: phospholipase/Carboxylesterase; KEGG: rrs:RoseRS_2931 phospholipase/carboxylesterase. (222 aa)    
Predicted Functional Partners:
Rcas_1954
KEGG: rrs:RoseRS_2932 hypothetical protein.
       0.773
Rcas_1956
KEGG: rrs:RoseRS_2930 hypothetical protein.
       0.773
Rcas_3297
KEGG: rrs:RoseRS_1864 hypothetical protein.
   
 0.655
Rcas_3603
KEGG: cme:CMF181C small GTP-binding protein of Rab family; TIGRFAM: small GTP-binding protein; PFAM: Miro domain protein; Ras family protein; SMART: Ras small GTPase, Ras type; Ras small GTPase, Rho type; Ras small GTPase, Rab type.
   
 0.655
Rcas_1952
PFAM: protein of unknown function DUF820; KEGG: rrs:RoseRS_2937 protein of unknown function DUF820.
       0.592
Rcas_1953
PFAM: protein of unknown function DUF820; KEGG: rrs:RoseRS_2936 protein of unknown function DUF820.
       0.592
Rcas_3749
PFAM: UspA domain protein; KEGG: rrs:RoseRS_3263 UspA domain protein.
  
    0.441
Rcas_2280
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bha:BH3305 hypothetical protein.
 
  
 0.440
Rcas_2413
Catechol 2,3-dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rrs:RoseRS_2570 catechol 2,3-dioxygenase.
  
  
 0.417
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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