STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_1970PFAM: protein of unknown function DUF422; KEGG: rrs:RoseRS_2706 protein of unknown function DUF422. (280 aa)    
Predicted Functional Partners:
Rcas_0937
PFAM: peptidase C60 sortase A and B; KEGG: rrs:RoseRS_4282 peptidase C60, sortase A and B.
  
     0.667
Rcas_1752
PFAM: Squalene/phytoene synthase; KEGG: rrs:RoseRS_2117 squalene/phytoene synthase.
 
   
 0.653
Rcas_2535
TIGRFAM: Zeta-phytoene desaturase; PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: rrs:RoseRS_1811 phytoene dehydrogenase-related protein.
 
   
 0.635
Rcas_1486
PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: rrs:RoseRS_3475 FAD dependent oxidoreductase.
 
   
 0.580
Rcas_1969
KEGG: rrs:RoseRS_2707 hypothetical protein.
       0.551
Rcas_2340
TIGRFAM: LPXTG-motif cell wall anchor domain; KEGG: rrs:RoseRS_2469 LPXTG-motif cell wall anchor domain.
  
     0.547
Rcas_3488
TIGRFAM: Zeta-phytoene desaturase; PFAM: amine oxidase; KEGG: rrs:RoseRS_2155 phytoene dehydrogenase-related protein.
 
   
 0.485
Rcas_3681
PFAM: peptidase C60 sortase A and B; KEGG: rrs:RoseRS_3728 peptidase C60, sortase A and B.
  
     0.484
Rcas_1585
TIGRFAM: Zeta-phytoene desaturase; PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: rrs:RoseRS_0943 phytoene dehydrogenase-related protein.
 
   
 0.465
Rcas_3535
KEGG: rrs:RoseRS_3712 hypothetical protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
   
 0.455
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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