Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Rcas_1972PFAM: von Willebrand factor type A; KEGG: rrs:RoseRS_2704 von Willebrand factor, type A. (847 aa)    
Predicted Functional Partners:
Rcas_1973
TIGRFAM: conserved hypothetical membrane protein; PFAM: von Willebrand factor type A; KEGG: rrs:RoseRS_2703 hypothetical protein.
     0.956
Rcas_1974
KEGG: rrs:RoseRS_2702 hypothetical protein.
 
    0.954
Rcas_3820
TIGRFAM: conserved hypothetical membrane protein; PFAM: von Willebrand factor type A; KEGG: rrs:RoseRS_1890 hypothetical protein.
     0.919
Rcas_0864
KEGG: rrs:RoseRS_0322 hypothetical protein.
 
 
   0.824
Rcas_3819
KEGG: rrs:RoseRS_1889 protein of unknown function DUF58.
 
    0.809
Rcas_3060
KEGG: rrs:RoseRS_2418 hypothetical protein.
 
     0.802
Rcas_1975
KEGG: rrs:RoseRS_2701 hypothetical protein.
       0.785
Rcas_1976
KEGG: rrs:RoseRS_2700 hypothetical protein.
       0.773
Rcas_3816
KEGG: rrs:RoseRS_1886 hypothetical protein.
  
     0.770
Rcas_3059
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rrs:RoseRS_2419 ABC transporter related.
 
     0.757
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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