Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Rcas_1981TIGRFAM: CRISPR-associated RAMP protein, Csm5 family; KEGG: ptr:743860 hypothetical protein LOC743860. (476 aa)    
Predicted Functional Partners:
Rcas_1980
TIGRFAM: CRISPR-associated RAMP protein, Csm4 family; KEGG: chy:CHY_2141 CRISPR-associated RAMP protein, Csm4 family.
 
 
 0.998
Rcas_1978
TIGRFAM: CRISPR-associated protein, Csm2 family; PFAM: protein of unknown function DUF310; KEGG: chy:CHY_2143 CRISPR-associated protein, Csm2 family.
 
 
 0.997
Rcas_1979
TIGRFAM: CRISPR-associated RAMP protein, Csm3 family; PFAM: protein of unknown function DUF324; KEGG: tpt:Tpet_1095 CRISPR-associated RAMP protein, Csm3 family.
 
 
 0.991
Rcas_1977
TIGRFAM: CRISPR-associated protein, Csm1 family; KEGG: csc:Csac_0075 CRISPR-associated protein, Csm1 family.
 
 
 0.989
Rcas_4238
KEGG: rrs:RoseRS_2587 hypothetical protein.
  
 
 0.919
Rcas_3292
PFAM: protein of unknown function DUF324; KEGG: rrs:RoseRS_1859 protein of unknown function DUF324.
 
 
 0.869
Rcas_3293
PFAM: protein of unknown function DUF324; KEGG: rrs:RoseRS_1860 protein of unknown function DUF324.
 
 
 0.869
Rcas_3294
KEGG: rrs:RoseRS_1861 hypothetical protein.
 
 
 0.864
Rcas_0185
KEGG: rrs:RoseRS_0362 hypothetical protein.
  
 
 0.847
Rcas_0187
PFAM: protein of unknown function DUF324; KEGG: rrs:RoseRS_0364 protein of unknown function DUF324.
  
 
 0.847
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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