Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Rcas_1997PFAM: protein of unknown function DUF820; KEGG: rrs:RoseRS_1713 protein of unknown function DUF820. (221 aa)    
Predicted Functional Partners:
Rcas_1998
PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: rrs:RoseRS_1712 alpha amylase, catalytic region.
 
     0.827
Rcas_0796
PFAM: protein of unknown function DUF820; KEGG: rrs:RoseRS_4443 protein of unknown function DUF820.
  
     0.773
Rcas_0795
PFAM: protein of unknown function DUF820; KEGG: rrs:RoseRS_4441 protein of unknown function DUF820.
  
     0.772
Rcas_0797
PFAM: protein of unknown function DUF820; KEGG: rrs:RoseRS_4443 protein of unknown function DUF820.
  
     0.772
Rcas_0118
PFAM: protein of unknown function DUF820; KEGG: rrs:RoseRS_4571 protein of unknown function DUF820.
  
     0.770
Rcas_1520
PFAM: protein of unknown function DUF820; KEGG: rrs:RoseRS_3408 protein of unknown function DUF820.
  
     0.768
Rcas_3375
PFAM: protein of unknown function DUF820; KEGG: rrs:RoseRS_2223 protein of unknown function DUF820.
  
     0.765
Rcas_2193
PFAM: protein of unknown function DUF820; KEGG: rrs:RoseRS_1069 protein of unknown function DUF820.
  
     0.764
Rcas_2194
PFAM: protein of unknown function DUF820; KEGG: rrs:RoseRS_1069 protein of unknown function DUF820.
  
     0.764
Rcas_2195
PFAM: protein of unknown function DUF820; KEGG: rrs:RoseRS_1069 protein of unknown function DUF820.
  
     0.764
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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