Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rcas_2007PFAM: protein of unknown function UPF0102; KEGG: rrs:RoseRS_1723 protein of unknown function UPF0102; Belongs to the UPF0102 family. (124 aa)    
Predicted Functional Partners:
Rcas_1135
KEGG: rrs:RoseRS_3748 Mg chelatase, subunit ChlI; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; SMART: AAA ATPase.
 
  
 0.784
Rcas_3242
PFAM: phosphoribosyltransferase; KEGG: rrs:RoseRS_1875 amidophosphoribosyltransferase-like protein.
 
    0.777
Rcas_2006
PFAM: Glu/Leu/Phe/Val dehydrogenase; Glu/Leu/Phe/Val dehydrogenase dimerisation region; KEGG: rrs:RoseRS_1722 Glu/Leu/Phe/Val dehydrogenase, C terminal; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
       0.773
Rcas_0168
TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: rrs:RoseRS_4590 DNA protecting protein DprA.
 
  
 0.721
Rcas_2008
PFAM: transferase hexapeptide repeat containing protein; KEGG: rrs:RoseRS_1724 transferase hexapeptide repeat containing protein.
  
    0.664
Rcas_3433
PFAM: ComEC/Rec2-related protein; KEGG: rrs:RoseRS_1609 ComEC/Rec2-related protein.
  
    0.626
ruvC
Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.
 
     0.565
Rcas_2009
PFAM: CBS domain containing protein; KEGG: rrs:RoseRS_1725 putative signal-transduction protein with CBS domains.
       0.545
Rcas_2010
PFAM: DNA methylase N-4/N-6 domain protein; KEGG: rrs:RoseRS_0375 DNA methylase N-4/N-6 domain protein; Belongs to the N(4)/N(6)-methyltransferase family.
       0.484
Rcas_2005
KEGG: rrs:RoseRS_2699 hypothetical protein.
       0.472
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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