STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_2037KEGG: rrs:RoseRS_1761 putative transmembrane anti-sigma factor. (313 aa)    
Predicted Functional Partners:
Rcas_2038
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: rrs:RoseRS_1760 RNA polymerase, sigma-24 subunit, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.885
Rcas_3520
KEGG: rrs:RoseRS_2152 hypothetical protein.
  
     0.715
Rcas_0820
PFAM: iron permease FTR1; KEGG: rrs:RoseRS_4468 iron permease FTR1.
  
     0.669
Rcas_3670
KEGG: rrs:RoseRS_4040 hypothetical protein.
  
     0.640
Rcas_3882
KEGG: rrs:RoseRS_0857 hypothetical protein.
  
     0.613
Rcas_3535
KEGG: rrs:RoseRS_3712 hypothetical protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
     0.606
Rcas_3536
KEGG: rrs:RoseRS_3713 hypothetical protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
     0.601
Rcas_2723
KEGG: rrs:RoseRS_2654 hypothetical protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
     0.582
Rcas_3344
KEGG: rrs:RoseRS_3991 hypothetical protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
     0.572
Rcas_0331
KEGG: rrs:RoseRS_0740 hypothetical protein.
  
     0.544
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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