STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_2065PFAM: alpha/beta hydrolase fold; cyclic nucleotide-binding; KEGG: rrs:RoseRS_1786 cyclic nucleotide-binding protein. (462 aa)    
Predicted Functional Partners:
Rcas_2519
PFAM: alpha/beta hydrolase fold; PGAP1 family protein; KEGG: rrs:RoseRS_1825 alpha/beta hydrolase fold.
 
    0.774
Rcas_1483
PFAM: alpha/beta hydrolase fold; KEGG: rrs:RoseRS_3478 alpha/beta hydrolase fold.
 
    0.771
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.735
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 
 0.728
Rcas_2533
PFAM: alpha/beta hydrolase fold; KEGG: rrs:RoseRS_1813 alpha/beta hydrolase fold.
 
    0.683
Rcas_1113
KEGG: rrs:RoseRS_3771 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
  
 
 0.664
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.662
Rcas_3297
KEGG: rrs:RoseRS_1864 hypothetical protein.
   
 0.630
Rcas_3603
KEGG: cme:CMF181C small GTP-binding protein of Rab family; TIGRFAM: small GTP-binding protein; PFAM: Miro domain protein; Ras family protein; SMART: Ras small GTPase, Ras type; Ras small GTPase, Rho type; Ras small GTPase, Rab type.
   
 0.630
Rcas_2148
KEGG: rrs:RoseRS_3026 signal transduction histidine kinase, nitrogen specific, NtrB; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
 
 
 0.621
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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