STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_2144PFAM: peptidase M23B; KEGG: rrs:RoseRS_3030 peptidase M23B. (212 aa)    
Predicted Functional Partners:
Rcas_2145
KEGG: rrs:RoseRS_3029 hypothetical protein.
  
  
 0.809
Rcas_2146
KEGG: rrs:RoseRS_3028 hypothetical protein.
       0.782
Rcas_2690
PFAM: Lytic transglycosylase catalytic; Tetratricopeptide TPR_4; SMART: Tetratricopeptide domain protein; KEGG: rrs:RoseRS_2641 lytic transglycosylase, catalytic.
 
  
 0.592
Rcas_3834
TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: rrs:RoseRS_1948 penicillin-binding protein, 1A family.
  
   
 0.533
Rcas_0508
Peptidoglycan glycosyltransferase; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: rrs:RoseRS_3627 glycosyl transferase, family 51.
  
   
 0.531
Rcas_2605
KEGG: rrs:RoseRS_2871 penicillin-binding protein, 1A family; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase.
  
   
 0.504
Rcas_2147
PFAM: initiation factor 2B related; KEGG: rrs:RoseRS_3027 initiation factor 2B related; Belongs to the eIF-2B alpha/beta/delta subunits family.
       0.493
mltG
Aminodeoxychorismate lyase; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation.
  
  
 0.473
ftsZ
Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.
 
   
 0.445
Rcas_2143
KEGG: rrs:RoseRS_3031 hypothetical protein.
       0.434
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.