STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_2161FHA domain containing protein; PFAM: Forkhead-associated protein; KEGG: rrs:RoseRS_1462 FHA domain containing protein. (173 aa)    
Predicted Functional Partners:
Rcas_0577
PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: rrs:RoseRS_3845 protein kinase.
 
 
 
 0.863
Rcas_2809
Serine/threonine protein kinase with FHA domain; PFAM: Forkhead-associated protein; protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: rrs:RoseRS_1671 protein kinase.
 
 
 
 0.862
Rcas_3040
PFAM: protein of unknown function RIO1; protein kinase; tyrosine protein kinase; PASTA domain containing protein; SMART: serine/threonine protein kinase; KEGG: rrs:RoseRS_2631 protein kinase.
 
 
 
 0.860
Rcas_3381
PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: rrs:RoseRS_2229 protein kinase.
 
 
 
 0.860
Rcas_2160
KEGG: rrs:RoseRS_1461 hypothetical protein.
       0.778
Rcas_2162
PFAM: von Willebrand factor type A; KEGG: rrs:RoseRS_1463 von Willebrand factor, type A.
 
     0.710
Rcas_1532
KEGG: rrs:RoseRS_3396 2-oxoglutarate dehydrogenase, E1 subunit; TIGRFAM: 2-oxoglutarate dehydrogenase, E1 subunit; PFAM: dehydrogenase E1 component; Transketolase central region.
    
 
 0.655
Rcas_2813
FHA domain containing protein; TIGRFAM: phage tail protein; PFAM: Forkhead-associated protein; tail domain protein; KEGG: rrs:RoseRS_1667 FHA domain containing protein.
 
     0.616
Rcas_1903
PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: rrs:RoseRS_2985 glutamate synthase (ferredoxin).
    
   0.608
Rcas_0525
PFAM: protein kinase; TPR repeat-containing protein; Tetratricopeptide TPR_3; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: tyrosine protein kinase; serine/threonine protein kinase; Tetratricopeptide domain protein; KEGG: rrs:RoseRS_0666 protein kinase.
 
 
 0.601
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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