Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rcas_2201PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rrs:RoseRS_2682 xylose isomerase domain protein TIM barrel. (258 aa)    
Predicted Functional Partners:
Rcas_2200
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: aau:AAur_0524 putative sugar phosphate isomerase/epimerase.
 
     0.884
Rcas_2202
PFAM: oxidoreductase domain protein; Oxidoreductase domain; homoserine dehydrogenase NAD-binding; KEGG: rrs:RoseRS_2681 oxidoreductase domain protein.
 
    0.766
Rcas_2203
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: rrs:RoseRS_2680 oxidoreductase domain protein.
 
    0.757
Rcas_2792
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rrs:RoseRS_1085 xylose isomerase domain protein TIM barrel.
  
     0.571
Rcas_1254
PFAM: Myo-inositol catabolism IolB domain protein; KEGG: rrs:RoseRS_0499 myo-inositol catabolism IolB domain protein.
 
  
 0.561
Rcas_2614
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: rrs:RoseRS_2880 oxidoreductase domain protein.
 
    0.542
Rcas_0518
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: rrs:RoseRS_3617 oxidoreductase domain protein.
 
    0.494
Rcas_0747
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rrs:RoseRS_4404 xylose isomerase domain protein TIM barrel.
  
     0.479
Rcas_4406
KEGG: rrs:RoseRS_3453 hypothetical protein.
 
   
 0.459
Rcas_0921
PFAM: alpha-L-rhamnosidase; KEGG: sus:Acid_3742 alpha-L-rhamnosidase.
  
     0.453
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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