STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_2203PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: rrs:RoseRS_2680 oxidoreductase domain protein. (375 aa)    
Predicted Functional Partners:
Rcas_2200
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: aau:AAur_0524 putative sugar phosphate isomerase/epimerase.
    0.977
Rcas_2202
PFAM: oxidoreductase domain protein; Oxidoreductase domain; homoserine dehydrogenase NAD-binding; KEGG: rrs:RoseRS_2681 oxidoreductase domain protein.
 
    
0.817
Rcas_2201
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rrs:RoseRS_2682 xylose isomerase domain protein TIM barrel.
 
    0.816
Rcas_3971
PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: rrs:RoseRS_1131 UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
  
  
 0.556
Rcas_0747
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rrs:RoseRS_4404 xylose isomerase domain protein TIM barrel.
 
    0.539
Rcas_0395
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rrs:RoseRS_0136 xylose isomerase domain protein TIM barrel.
 
    0.525
Rcas_2792
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rrs:RoseRS_1085 xylose isomerase domain protein TIM barrel.
 
    0.519
nadE-2
NAD synthase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
       0.496
Rcas_1254
PFAM: Myo-inositol catabolism IolB domain protein; KEGG: rrs:RoseRS_0499 myo-inositol catabolism IolB domain protein.
  
  
 0.486
Rcas_2296
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rrs:RoseRS_1537 xylose isomerase domain protein TIM barrel.
 
    0.485
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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