STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_2247KEGG: rrs:RoseRS_3085 hypothetical protein. (70 aa)    
Predicted Functional Partners:
Rcas_2248
PFAM: periplasmic binding protein; KEGG: rrs:RoseRS_3086 periplasmic binding protein.
       0.500
Rcas_2249
KEGG: rrs:RoseRS_3087 ferredoxin-like protein.
       0.479
Rcas_2250
PFAM: transport system permease protein; KEGG: rrs:RoseRS_3088 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
       0.414
Rcas_2251
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rrs:RoseRS_3089 ABC transporter related.
       0.414
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.