STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_2254PFAM: PSP1 domain protein; KEGG: rrs:RoseRS_1637 PSP1 domain protein. (406 aa)    
Predicted Functional Partners:
rny
RNA binding metal dependent phosphohydrolase; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family.
 
  
 0.788
Rcas_2257
Maf protein; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.
 
    0.762
Rcas_2259
PFAM: diacylglycerol kinase catalytic region; KEGG: rrs:RoseRS_1632 diacylglycerol kinase, catalytic region.
       0.732
Rcas_2261
PFAM: glycosyl transferase group 1; KEGG: rrs:RoseRS_1630 glycosyl transferase, group 1.
  
    0.730
Rcas_2255
PFAM: oxidoreductase domain protein; KEGG: rrs:RoseRS_1636 oxidoreductase domain protein.
       0.723
Rcas_2256
PFAM: protein of unknown function DUF344; KEGG: rrs:RoseRS_1635 protein of unknown function DUF344.
       0.723
Rcas_2258
Two component transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; response regulator receiver; Bacterio-opsin activator HTH domain protein; KEGG: rrs:RoseRS_1633 two component transcriptional regulator, LuxR family.
       0.723
Rcas_2260
PFAM: WD40 domain protein beta Propeller; KEGG: rrs:RoseRS_1631 WD40 domain protein beta propeller.
       0.723
Rcas_2253
Adenylate/guanylate cyclase with GAF sensor and FHA domain; PFAM: Forkhead-associated protein; adenylyl cyclase class-3/4/guanylyl cyclase; GAF domain protein; KEGG: rrs:RoseRS_1638 putative adenylate/guanylate cyclase.
  
    0.706
recR
Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.
      0.703
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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