STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_2276PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: gsu:GSU0493 pyridine nucleotide-disulphide oxidoreductase family protein. (416 aa)    
Predicted Functional Partners:
Rcas_1369
KEGG: rrs:RoseRS_3538 hypothetical protein.
    
 
 0.542
Rcas_1876
TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein; KEGG: rrs:RoseRS_2733 hydrogenase maturation protease.
    
 
 0.542
Rcas_3145
TIGRFAM: hydrogenase maturation protease; hydrogenase expression/formation protein; hydrogenase maturation peptidase superfamily; PFAM: peptidase M52 hydrogen uptake protein; KEGG: rrs:RoseRS_2322 hydrogenase expression/formation protein.
    
 
 0.542
Rcas_3803
KEGG: mva:Mvan_2367 hydrogenase maturation protease.
    
 
 0.542
Rcas_3804
TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein; KEGG: msm:MSMEG_2264 peptidase M52, hydrogen uptake protein.
    
 
 0.542
Rcas_2277
PFAM: peptidase C11 clostripain; KEGG: rrs:RoseRS_1520 FHA domain containing protein.
       0.523
Rcas_1768
NADH dehydrogenase (quinone); PFAM: NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein; NADH/Ubiquinone/plastoquinone (complex I); KEGG: rrs:RoseRS_2102 NADH dehydrogenase (quinone).
  
  
 0.513
Rcas_1903
PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: rrs:RoseRS_2985 glutamate synthase (ferredoxin).
  
  
 0.513
Rcas_3428
PFAM: peptidylprolyl isomerase FKBP-type; KEGG: rrs:RoseRS_1613 peptidylprolyl isomerase, FKBP-type.
  
    0.504
Rcas_3558
Cytochrome c oxidase subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
  
  
 0.496
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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