STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_2303PFAM: Extracellular ligand-binding receptor; KEGG: rrs:RoseRS_1544 extracellular ligand-binding receptor. (432 aa)    
Predicted Functional Partners:
Rcas_3499
ABC transporter related; PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; KEGG: nca:Noca_4103 ABC transporter related; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.981
Rcas_2301
PFAM: inner-membrane translocator; KEGG: bbr:BB1491 putative high-affinity branched-chain amino acid transporter membrane protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.975
Rcas_2302
PFAM: inner-membrane translocator; KEGG: rrs:RoseRS_1543 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.972
Rcas_2299
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rrs:RoseRS_1540 ABC transporter related.
 
  
 0.916
Rcas_2298
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rrs:RoseRS_1539 ABC transporter related.
 
  
 0.907
Rcas_1894
PFAM: inner-membrane translocator; KEGG: rrs:RoseRS_2977 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.886
Rcas_0543
PFAM: inner-membrane translocator; KEGG: rrs:RoseRS_0625 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.880
Rcas_3500
PFAM: inner-membrane translocator; KEGG: nca:Noca_4104 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.877
Rcas_1893
PFAM: inner-membrane translocator; KEGG: rrs:RoseRS_2976 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.869
Rcas_0544
PFAM: inner-membrane translocator; KEGG: rrs:RoseRS_0624 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.866
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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