STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_2304Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: rrs:RoseRS_1545 GntR domain protein. (224 aa)    
Predicted Functional Partners:
Rcas_2120
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: aau:AAur_1100 putative transcription regulator, GntR family.
  
     0.775
Rcas_3844
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: swi:Swit_0278 transcriptional regulator, GntR family.
  
     0.775
Rcas_2302
PFAM: inner-membrane translocator; KEGG: rrs:RoseRS_1543 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
       0.659
Rcas_2303
PFAM: Extracellular ligand-binding receptor; KEGG: rrs:RoseRS_1544 extracellular ligand-binding receptor.
       0.659
Rcas_2300
PFAM: cyclase family protein; KEGG: rrs:RoseRS_1541 cyclase family protein.
       0.649
Rcas_2301
PFAM: inner-membrane translocator; KEGG: bbr:BB1491 putative high-affinity branched-chain amino acid transporter membrane protein; Belongs to the binding-protein-dependent transport system permease family.
       0.646
Rcas_2412
PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: rrs:RoseRS_2571 regulatory protein, IclR.
  
  
 0.555
Rcas_2305
TIGRFAM: putative delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: rrs:RoseRS_1548 putative delta-1-pyrroline-5-carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
  
 0.533
Rcas_1556
TIGRFAM: acetolactate synthase, small subunit; PFAM: amino acid-binding ACT domain protein; KEGG: rrs:RoseRS_1967 acetolactate synthase, small subunit.
   
    0.410
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.