STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_2316Transcriptional regulator, ArsR family; PFAM: low molecular weight phosphotyrosine protein phosphatase; regulatory protein ArsR; KEGG: rrs:RoseRS_1228 protein tyrosine phosphatase. (255 aa)    
Predicted Functional Partners:
Rcas_1187
PFAM: beta-lactamase domain protein; SMART: Rhodanese domain protein; KEGG: rrs:RoseRS_0816 beta-lactamase domain protein.
  
 
 0.894
Rcas_3632
PFAM: beta-lactamase domain protein; SMART: Rhodanese domain protein; KEGG: rrs:RoseRS_3957 beta-lactamase domain protein.
  
 
 0.892
Rcas_2315
Transcriptional regulator, ArsR family; PFAM: low molecular weight phosphotyrosine protein phosphatase; regulatory protein ArsR; KEGG: rrs:RoseRS_1227 protein tyrosine phosphatase.
 
  
0.811
Rcas_2314
KEGG: rrs:RoseRS_1226 glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
  
  
 0.755
Rcas_4052
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: rrs:RoseRS_1213 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein.
     
 0.693
Rcas_2313
PFAM: major facilitator superfamily MFS_1; KEGG: rrs:RoseRS_1225 major facilitator superfamily MFS_1.
     
 0.592
Rcas_0893
Sulphate transporter; PFAM: Rhodanese domain protein; Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: rrs:RoseRS_4186 sulphate transporter.
  
 
 0.559
Rcas_2527
TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: rrs:RoseRS_1818 thioredoxin.
  
 
 0.559
Rcas_3336
TIGRFAM: thioredoxin; PFAM: glutaredoxin 2; Redoxin domain protein; Thioredoxin domain; KEGG: rrs:RoseRS_1006 thioredoxin.
  
 
 0.559
Rcas_4105
TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: rrs:RoseRS_3294 thioredoxin; Belongs to the thioredoxin family.
  
 
 0.559
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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