STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_2400KEGG: rrs:RoseRS_2775 hypothetical protein. (465 aa)    
Predicted Functional Partners:
Rcas_0685
PFAM: Radical SAM domain protein; KEGG: rrs:RoseRS_0147 radical SAM domain protein.
  
 
 0.788
Rcas_2879
Beta-ketoacyl synthase; PFAM: short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: rrs:RoseRS_2905 beta-ketoacyl synthase.
 
 
 0.620
glgC
Glucose-1-phosphate adenylyltransferase; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.
   
    0.609
Rcas_0947
PFAM: transferase hexapeptide repeat containing protein; Nucleotidyl transferase; KEGG: rrs:RoseRS_3698 nucleotidyl transferase; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.
   
    0.609
Rcas_2399
KEGG: rrs:RoseRS_2774 hypothetical protein.
       0.554
Rcas_3454
TIGRFAM: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rrs:RoseRS_2731 rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
  
 
 0.542
Rcas_4360
PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: rrs:RoseRS_0174 cobalamin (vitamin B12) biosynthesis CbiM protein.
  
     0.535
Rcas_2397
KEGG: rrs:RoseRS_2772 TIM-barrel enzyme possibly a dioxygenase-like protein.
       0.492
Rcas_2398
PFAM: protein of unknown function UPF0261; KEGG: rrs:RoseRS_2773 protein of unknown function UPF0261.
       0.492
Rcas_0125
PFAM: protein of unknown function DUF323; KEGG: rrs:RoseRS_4578 protein of unknown function DUF323.
 
   0.480
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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