STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_2416PFAM: DNA polymerase beta domain protein region; KEGG: gme:Gmet_0479 DNA polymerase, beta-like region. (103 aa)    
Predicted Functional Partners:
Rcas_2417
PFAM: protein of unknown function DUF86; KEGG: syf:Synpcc7942_0275 hypothetical protein.
 
  
 0.951
Rcas_3961
PFAM: protein of unknown function DUF86; KEGG: syf:Synpcc7942_0032 hypothetical protein.
 
  
 0.779
Rcas_2463
PFAM: protein of unknown function DUF86; KEGG: rrs:RoseRS_3558 protein of unknown function DUF86.
 
  
 0.737
Rcas_0089
PFAM: protein of unknown function DUF86; KEGG: rrs:RoseRS_0899 protein of unknown function DUF86.
 
  
 0.720
Rcas_2418
KEGG: rrs:RoseRS_2567 hypothetical protein.
       0.686
Rcas_0617
KEGG: syf:Synpcc7942_B2653 transcriptional modulator of MazE/toxin, MazF.
 
     0.546
Rcas_2415
Hypothetical protein.
       0.543
Rcas_2414
PFAM: 4-hydroxyphenylacetate 3-hydroxylase; KEGG: rrs:RoseRS_2569 4-hydroxyphenylacetate 3-hydroxylase.
 
     0.530
Rcas_0088
PFAM: DNA polymerase beta domain protein region; KEGG: rrs:RoseRS_0900 DNA polymerase, beta domain protein region.
  
     0.522
Rcas_2462
PFAM: DNA polymerase beta domain protein region; KEGG: ttj:TTHA1512 putative nucleotidyltransferase.
  
     0.432
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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