STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_2421KEGG: rrs:RoseRS_2811 oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily. (349 aa)    
Predicted Functional Partners:
Rcas_1060
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rrs:RoseRS_0415 binding-protein-dependent transport systems inner membrane component.
  
 0.983
Rcas_2802
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rrs:RoseRS_1095 binding-protein-dependent transport systems inner membrane component.
  
 0.983
Rcas_2422
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rrs:RoseRS_2810 binding-protein-dependent transport systems inner membrane component.
  
 0.982
Rcas_0385
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rrs:RoseRS_4597 binding-protein-dependent transport systems inner membrane component.
  
 0.981
Rcas_3840
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: chy:CHY_1130 oligopeptide/dipeptide ABC transporter, permease protein.
  
 0.981
Rcas_3847
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: fnu:FN0398 dipeptide transport system permease protein dppC.
  
 0.980
Rcas_2452
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tpt:Tpet_0865 binding-protein-dependent transport systems inner membrane component.
  
 0.958
Rcas_2112
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rrs:RoseRS_3048 binding-protein-dependent transport systems inner membrane component.
  
 0.932
Rcas_0904
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tpt:Tpet_0851 binding-protein-dependent transport systems inner membrane component.
  
 0.926
Rcas_0646
Cobalt ABC transporter, ATPase subunit; Part of an ABC transporter complex. Responsible for energy coupling to the transport system.
 
    
0.906
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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