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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rcas_2467KEGG: rrs:RoseRS_2846 Rossmann fold nucleotide-binding protein involved in DNA uptake-like protein. (439 aa)    
Predicted Functional Partners:
Rcas_2468
ATP-dependent DNA helicase, RecQ family; KEGG: ana:alr3451 ATP-dependent DNA helicase; TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases.
 
   
 0.947
Rcas_3242
PFAM: phosphoribosyltransferase; KEGG: rrs:RoseRS_1875 amidophosphoribosyltransferase-like protein.
 
 
 0.701
Rcas_1707
PFAM: peptidase A24A prepilin type IV; KEGG: pca:Pcar_2139 type 4 prepilin-like proteins leader peptide processing enzyme.
  
  
 0.647
Rcas_3416
PFAM: peptidase A24A prepilin type IV; peptidase A24A domain protein; KEGG: rrs:RoseRS_1565 peptidase A24A domain protein.
  
  
 0.647
Rcas_2470
Diguanylate cyclase with GAF sensor; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; KEGG: rrs:RoseRS_2842 diguanylate cyclase.
  
    0.578
Rcas_0192
KEGG: rrs:RoseRS_0369 hydrolase of the HD superfamily (permuted catalytic motifs)-like protein.
  
     0.574
Rcas_3433
PFAM: ComEC/Rec2-related protein; KEGG: rrs:RoseRS_1609 ComEC/Rec2-related protein.
  
  
 0.543
Rcas_3547
PFAM: protein of unknown function DUF262; KEGG: pth:PTH_0153 hypothetical protein.
 
     0.543
Rcas_0190
KEGG: rrs:RoseRS_0367 hypothetical protein.
  
     0.528
Rcas_3268
PFAM: Alkaline phosphatase; KEGG: rrs:RoseRS_1990 alkaline phosphatase.
  
    0.528
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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