STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_2498KEGG: rrs:RoseRS_2718 hypothetical protein. (157 aa)    
Predicted Functional Partners:
Rcas_3977
TIGRFAM: F420-dependent oxidoreductase, putative; PFAM: protein of unknown function DUF129; KEGG: rrs:RoseRS_1136 F420-dependent oxidoreductase, putative.
  
   
 0.786
Rcas_2497
PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: rrs:RoseRS_2717 ABC transporter related.
     
 0.778
Rcas_3979
TIGRFAM: LPPG domain containing protein; PFAM: protein of unknown function UPF0052 and CofD; KEGG: rrs:RoseRS_1138 LPPG domain containing protein.
 
   
 0.778
Rcas_1303
PFAM: luciferase family protein; KEGG: rxy:Rxyl_0211 luciferase-like protein.
  
   
 0.776
Rcas_3959
PFAM: luciferase family protein; KEGG: rrs:RoseRS_1121 luciferase family protein.
  
   
 0.776
Rcas_3981
PFAM: luciferase family protein; KEGG: rrs:RoseRS_1140 luciferase family protein.
  
   
 0.772
Rcas_0241
PFAM: luciferase family protein; KEGG: mbo:Mb0815c hypothetical protein.
  
   
 0.758
Rcas_3982
PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: rrs:RoseRS_1141 pyridoxamine 5'-phosphate oxidase-related, FMN-binding.
  
    0.755
Rcas_2560
PFAM: luciferase family protein; KEGG: rrs:RoseRS_2780 luciferase family protein.
  
   
 0.734
Rcas_2741
PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: rrs:RoseRS_2673 pyridoxamine 5'-phosphate oxidase-related, FMN-binding.
 
     0.717
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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