STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_2507PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rrs:RoseRS_1837 methyltransferase type 12. (272 aa)    
Predicted Functional Partners:
Rcas_2506
KEGG: rrs:RoseRS_1838 hypothetical protein.
 
    0.809
Rcas_2727
PFAM: glycosyl transferase family 39; KEGG: rrs:RoseRS_2659 glycosyl transferase, family 39.
  
     0.713
Rcas_2726
PFAM: Tetratricopeptide TPR_4; KEGG: rrs:RoseRS_2658 glycosyl transferase, family 39.
  
     0.697
Rcas_1245
PFAM: HEAT domain containing protein; PBS lyase HEAT domain protein repeat-containing protein; KEGG: rrs:RoseRS_0781 PBS lyase heat domain protein repeat-containing protein.
  
     0.690
Rcas_3008
KEGG: rrs:RoseRS_2034 hypothetical protein.
  
     0.685
Rcas_1641
PFAM: PHP domain protein; AAA-4 family protein; SMART: phosphoesterase PHP domain protein; KEGG: rrs:RoseRS_1312 AAA-4 family protein.
 
    0.678
Rcas_1943
KEGG: rrs:RoseRS_2957 membrane protein-like protein.
  
     0.675
Rcas_2725
KEGG: rrs:RoseRS_2657 hypothetical protein.
  
     0.673
Rcas_2921
KEGG: rrs:RoseRS_3193 hypothetical protein.
  
     0.652
Rcas_0803
N-acetylglucosamine-1-phosphate uridyltransferase-like protein; KEGG: rrs:RoseRS_4450 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains)-like protein.
  
    0.615
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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