STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_2512KEGG: rrs:RoseRS_1832 hypothetical protein. (328 aa)    
Predicted Functional Partners:
Rcas_2511
KEGG: rrs:RoseRS_1833 hypothetical protein.
 
     0.958
Rcas_2508
PFAM: protein of unknown function DUF58; KEGG: rrs:RoseRS_1836 protein of unknown function DUF58.
 
     0.750
Rcas_1082
PFAM: protein of unknown function DUF95 transmembrane; KEGG: rrs:RoseRS_3801 protein of unknown function DUF95, transmembrane.
  
     0.743
Rcas_1439
KEGG: rrs:RoseRS_1037 hypothetical protein.
  
     0.733
Rcas_2510
KEGG: rrs:RoseRS_1834 hypothetical protein.
       0.728
Rcas_1641
PFAM: PHP domain protein; AAA-4 family protein; SMART: phosphoesterase PHP domain protein; KEGG: rrs:RoseRS_1312 AAA-4 family protein.
  
     0.727
Rcas_3447
PFAM: RDD domain containing protein; KEGG: rrs:RoseRS_1596 RDD domain containing protein.
  
     0.725
Rcas_0362
PFAM: Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rrs:RoseRS_0120 TPR repeat-containing protein.
  
     0.721
Rcas_1976
KEGG: rrs:RoseRS_2700 hypothetical protein.
  
     0.716
Rcas_1943
KEGG: rrs:RoseRS_2957 membrane protein-like protein.
  
     0.709
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.