STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_2514PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: rrs:RoseRS_1830 tagatose-bisphosphate aldolase. (346 aa)    
Predicted Functional Partners:
Rcas_2513
6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis; Belongs to the phosphofructokinase type A (PFKA) family.
 
  
 0.979
pfkA
6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis; Belongs to the phosphofructokinase type A (PFKA) family. Mixed-substrate PFK group III subfamily.
    
 0.945
Rcas_0209
1-phosphofructokinase; PFAM: PfkB domain protein; KEGG: rrs:RoseRS_0693 1-phosphofructokinase; Belongs to the carbohydrate kinase PfkB family.
 
  
 0.927
Rcas_1875
6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis.
    
 0.908
Rcas_0715
PFAM: aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase; KEGG: rrs:RoseRS_4359 aldehyde ferredoxin oxidoreductase.
     
  0.800
Rcas_1863
PFAM: aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase; KEGG: tth:TTC1834 tungsten-containing aldehyde ferredoxin oxidoreductase.
     
  0.800
Rcas_1027
KEGG: rrs:RoseRS_0399 hypothetical protein.
 
  
 0.730
Rcas_0521
Beta-glucosidase; PFAM: glycoside hydrolase family 1; KEGG: rrs:RoseRS_3614 beta-glucosidase.
  
  
 0.689
Rcas_1932
PFAM: glycoside hydrolase family 1; KEGG: rrs:RoseRS_2967 glycoside hydrolase, family 1; Belongs to the glycosyl hydrolase 1 family.
  
  
 0.689
Rcas_3314
KEGG: rrs:RoseRS_3885 hypothetical protein.
  
  
 0.689
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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