Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rcas_2575PFAM: von Willebrand factor type A; KEGG: rrs:RoseRS_2796 von Willebrand factor, type A. (547 aa)    
Predicted Functional Partners:
Rcas_1278
PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rrs:RoseRS_0525 ABC transporter related.
  
 
 0.748
Rcas_2394
PFAM: von Willebrand factor type A; KEGG: rrs:RoseRS_2768 von Willebrand factor, type A.
 
    0.710
Rcas_2725
KEGG: rrs:RoseRS_2657 hypothetical protein.
  
     0.686
Rcas_2162
PFAM: von Willebrand factor type A; KEGG: rrs:RoseRS_1463 von Willebrand factor, type A.
 
    0.654
Rcas_0225
KEGG: rrs:RoseRS_0608 hypothetical protein.
  
     0.622
Rcas_1728
TIGRFAM: conserved repeat domain; KEGG: rrs:RoseRS_1002 conserved repeat domain.
  
    0.601
Rcas_2726
PFAM: Tetratricopeptide TPR_4; KEGG: rrs:RoseRS_2658 glycosyl transferase, family 39.
  
     0.595
Rcas_1245
PFAM: HEAT domain containing protein; PBS lyase HEAT domain protein repeat-containing protein; KEGG: rrs:RoseRS_0781 PBS lyase heat domain protein repeat-containing protein.
 
     0.577
Rcas_3207
PFAM: WD-40 repeat protein; KEGG: rrs:RoseRS_3910 WD-40 repeat protein.
 
    0.575
Rcas_2395
FHA domain containing protein; PFAM: Forkhead-associated protein; KEGG: rrs:RoseRS_2769 FHA domain containing protein.
 
     0.565
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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