STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_2588Hypothetical protein. (172 aa)    
Predicted Functional Partners:
Rcas_3754
TIGRFAM: photosynthetic reaction center, M subunit; photosynthetic reaction center L subunit; PFAM: photosynthetic reaction centre protein; KEGG: rrs:RoseRS_3268 photosynthetic reaction center, M subunit.
   
 
 0.976
Rcas_3753
KEGG: rrs:RoseRS_3267 hypothetical protein.
   
 
 0.935
Rcas_2529
PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: rrs:RoseRS_1816 substrate-binding region of ABC-type glycine betaine transport system.
  
    0.797
Rcas_2589
PFAM: protein of unknown function UPF0118; KEGG: ava:Ava_2233 hypothetical protein.
  
    0.783
Rcas_2590
KEGG: nha:Nham_0995 glucan 1,4-alpha-glucosidase; TIGRFAM: glucan 1,4-alpha-glucosidase; PFAM: glycoside hydrolase 15-related; Glucodextranase N.
       0.782
Rcas_2591
PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: mxa:MXAN_6169 oxidoreductase, zinc-binding dehydrogenase family.
  
  
 0.782
Rcas_1195
Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; ATP-binding region ATPase domain protein; KEGG: rrs:RoseRS_2161 anti-sigma-factor antagonist.
   
  
 0.757
Rcas_2587
PFAM: protein of unknown function DUF6 transmembrane; KEGG: rme:Rmet_4976 protein of unknown function DUF6, transmembrane.
       0.752
Rcas_2592
PFAM: major facilitator superfamily MFS_1; KEGG: tac:Ta0156 hypothetical protein.
       0.728
Rcas_1188
KEGG: rrs:RoseRS_4471 hypothetical protein.
  
 
 0.695
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.