STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_2756KEGG: rrs:RoseRS_2514 uncharacterized protein containing SIS (sugar isomerase) phosphosugar binding domain-like protein. (270 aa)    
Predicted Functional Partners:
Rcas_2758
PFAM: Methionine synthase vitamin-B12 independent; Cobalamin-independent synthase MetE domain protein; KEGG: rrs:RoseRS_2516 methionine synthase, vitamin-B12 independent.
 
     0.827
Rcas_2755
Oxidoreductase domain protein; PFAM: Semialdehyde dehydrogenase NAD - binding; oxidoreductase domain protein; Oxidoreductase domain; KEGG: rrs:RoseRS_2513 oxidoreductase domain protein.
 
     0.803
Rcas_2757
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rrs:RoseRS_2515 short-chain dehydrogenase/reductase SDR.
       0.760
Rcas_1384
KEGG: rrs:RoseRS_4114 hypothetical protein.
 
     0.658
Rcas_0043
KEGG: rrs:RoseRS_0859 hypothetical protein.
  
     0.611
Rcas_2754
PFAM: ROK family protein; KEGG: rrs:RoseRS_2512 ROK family protein.
  
    0.560
Rcas_2792
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rrs:RoseRS_1085 xylose isomerase domain protein TIM barrel.
  
     0.503
Rcas_3850
KEGG: sth:STH1938 hypothetical protein.
 
     0.492
Rcas_3446
PFAM: SCP-like extracellular; KEGG: rrs:RoseRS_1597 allergen V5/TPX-1 family protein.
  
     0.426
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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