STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_2768KEGG: rrs:RoseRS_2835 hypothetical protein. (361 aa)    
Predicted Functional Partners:
Rcas_3615
Alpha-L-fucosidase; PFAM: glycoside hydrolase family 29 (alpha-L-fucosidase); KEGG: rrs:RoseRS_3943 alpha-L-fucosidase.
 
   
 0.784
Rcas_2769
KEGG: rrs:RoseRS_2834 hypothetical protein.
       0.773
Rcas_2554
Alpha-L-fucosidase; PFAM: glycoside hydrolase family 29 (alpha-L-fucosidase); KEGG: rrs:RoseRS_2814 alpha-L-fucosidase.
 
   
 0.692
Rcas_1874
PFAM: alpha-L-rhamnosidase; alpha-L-rhamnosidase domain protein; KEGG: rrs:RoseRS_2735 alpha-L-rhamnosidase.
  
     0.668
Rcas_0921
PFAM: alpha-L-rhamnosidase; KEGG: sus:Acid_3742 alpha-L-rhamnosidase.
 
     0.639
Rcas_2851
Alpha-mannosidase; PFAM: glycoside hydrolase family 38; glycosyl hydrolase 38 domain protein; Glycoside hydrolase family 38 central region; KEGG: rrs:RoseRS_1434 alpha-mannosidase.
 
     0.616
Rcas_1342
PFAM: protein of unknown function DUF1680; KEGG: rrs:RoseRS_3545 protein of unknown function DUF1680.
  
     0.615
Rcas_3244
PFAM: glycoside hydrolase family 2 sugar binding; KEGG: rrs:RoseRS_0991 glycoside hydrolase family 2, sugar binding.
 
   
 0.611
Rcas_2770
KEGG: rrs:RoseRS_2832 hypothetical protein.
       0.605
Rcas_3364
PFAM: ADP-ribosylation/Crystallin J1; KEGG: rrs:RoseRS_2215 ADP-ribosylation/crystallin J1.
 
     0.598
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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