STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_2796Putative transcriptional regulator, GntR family; PFAM: aminotransferase class I and II; KEGG: rrs:RoseRS_1089 putative transcriptional regulator, GntR family. (362 aa)    
Predicted Functional Partners:
Rcas_1567
Putative transcriptional regulator, GntR family; PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; KEGG: rrs:RoseRS_0924 putative transcriptional regulator, GntR family.
  
  
 
0.923
Rcas_3001
Putative transcriptional regulator, GntR family; PFAM: aminotransferase class I and II; KEGG: rrs:RoseRS_2027 putative transcriptional regulator, GntR family.
  
  
 
0.921
Rcas_3471
PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: rrs:RoseRS_1057 3-isopropylmalate dehydrogenase.
  
 0.914
Rcas_3469
Lysine biosynthesis enzyme LysX; TIGRFAM: alpha-L-glutamate ligase, RimK family; lysine biosynthesis enzyme LysX; PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; RimK domain protein ATP-grasp; KEGG: rrs:RoseRS_1059 lysine biosynthesis enzyme LysX; Belongs to the RimK family.
     
  0.900
Rcas_2797
KEGG: rrs:RoseRS_1090 hypothetical protein.
       0.523
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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