STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_2821KEGG: rrs:RoseRS_1659 hypothetical protein. (122 aa)    
Predicted Functional Partners:
Rcas_2820
TIGRFAM: conserved hypothetical phage tail protein; PFAM: conserved hypothetical protein; KEGG: rrs:RoseRS_1660 conserved hypothetical phage tail protein.
  
 0.954
Rcas_2817
PFAM: Rhs element Vgr protein; KEGG: rrs:RoseRS_1663 rhs element Vgr protein.
 
   
 0.857
Rcas_2818
PFAM: Peptidoglycan-binding LysM; KEGG: rrs:RoseRS_1662 hypothetical protein.
 
    0.853
Rcas_2814
KEGG: rrs:RoseRS_1666 hypothetical protein.
 
     0.849
Rcas_2815
PFAM: GPW/gp25 family protein; KEGG: rrs:RoseRS_1665 gpW/GP25 family protein.
 
     0.849
Rcas_2813
FHA domain containing protein; TIGRFAM: phage tail protein; PFAM: Forkhead-associated protein; tail domain protein; KEGG: rrs:RoseRS_1667 FHA domain containing protein.
 
     0.827
Rcas_2823
PFAM: tail sheath protein; KEGG: rrs:RoseRS_1657 phage tail sheath protein.
 
  
 0.815
Rcas_2822
TIGRFAM: conserved hypothetical phage tail protein; PFAM: conserved hypothetical protein; KEGG: rrs:RoseRS_1658 conserved hypothetical phage tail protein.
 
  
 0.802
Rcas_2824
KEGG: rrs:RoseRS_1656 hypothetical protein.
 
     0.799
Rcas_2830
PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: rrs:RoseRS_1651 AAA ATPase, central domain protein.
 
     0.799
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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