STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_2829KEGG: rrs:RoseRS_1652 hypothetical protein. (550 aa)    
Predicted Functional Partners:
Rcas_2828
KEGG: rrs:RoseRS_1653 hypothetical protein.
       0.727
Rcas_2827
PFAM: Peptidoglycan-binding domain 1 protein; KEGG: rrs:RoseRS_1654 peptidoglycan-binding domain 1 protein.
       0.680
Rcas_2823
PFAM: tail sheath protein; KEGG: rrs:RoseRS_1657 phage tail sheath protein.
  
    0.550
Rcas_2826
PFAM: Peptidoglycan-binding domain 1 protein; KEGG: rrs:RoseRS_1654 peptidoglycan-binding domain 1 protein.
      
0.483
Rcas_2824
KEGG: rrs:RoseRS_1656 hypothetical protein.
       0.445
Rcas_2825
KEGG: rrs:RoseRS_1655 hypothetical protein.
       0.445
Rcas_2822
TIGRFAM: conserved hypothetical phage tail protein; PFAM: conserved hypothetical protein; KEGG: rrs:RoseRS_1658 conserved hypothetical phage tail protein.
       0.439
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.