STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_2904KEGG: rrs:RoseRS_3177 spermidine synthase-like protein. (551 aa)    
Predicted Functional Partners:
Rcas_0169
KEGG: rrs:RoseRS_4588 spermidine synthase-like protein.
  
     0.725
Rcas_2905
PFAM: protein of unknown function YGGT; KEGG: rrs:RoseRS_3178 protein of unknown function YGGT.
       0.560
Rcas_2903
PFAM: Auxin Efflux Carrier; KEGG: rrs:RoseRS_3176 auxin efflux carrier.
       0.522
Rcas_0531
KEGG: rrs:RoseRS_0660 uncharacterized membrane protein-like protein.
  
     0.489
Rcas_3437
KEGG: rrs:RoseRS_1607 hypothetical protein.
  
     0.489
Rcas_0532
Tetratricopeptide TPR_4; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rrs:RoseRS_0659 tetratricopeptide TPR_2 repeat protein.
  
     0.466
hisG
ATP phosphoribosyltransferase; Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity. Belongs to the ATP phosphoribosyltransferase family. Long subfamily.
 
    0.466
Rcas_3718
KEGG: rrs:RoseRS_3230 hypothetical protein.
  
    0.457
Rcas_0153
PFAM: conserved hypothetical protein; KEGG: rrs:RoseRS_0481 conserved hypothetical protein 374.
  
     0.410
Rcas_4131
PFAM: glycosyl transferase family 39; KEGG: rrs:RoseRS_0410 glycosyl transferase, family 39.
  
    0.405
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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