STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_2912PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: rrs:RoseRS_3184 ATPase associated with various cellular activities, AAA_3. (318 aa)    
Predicted Functional Partners:
Rcas_2911
PFAM: protein of unknown function DUF58; KEGG: rrs:RoseRS_3183 protein of unknown function DUF58.
 
  
 0.903
Rcas_2913
KEGG: rrs:RoseRS_3185 hypothetical protein.
       0.741
Rcas_0245
PFAM: transglutaminase domain protein; KEGG: rrs:RoseRS_0315 transglutaminase domain protein.
 
  
 0.727
Rcas_2888
PFAM: protein of unknown function DUF58; KEGG: rrs:RoseRS_3160 protein of unknown function DUF58.
 
  
 0.640
Rcas_2910
PFAM: protein of unknown function DUF820; KEGG: rrs:RoseRS_2223 protein of unknown function DUF820.
       0.574
hisG
ATP phosphoribosyltransferase; Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity. Belongs to the ATP phosphoribosyltransferase family. Long subfamily.
     
 0.572
hisD
Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.
       0.570
Rcas_2908
KEGG: rrs:RoseRS_3181 hypothetical protein.
       0.570
Rcas_2909
PFAM: protein of unknown function DUF820; KEGG: rrs:RoseRS_2797 protein of unknown function DUF820.
       0.570
Rcas_2508
PFAM: protein of unknown function DUF58; KEGG: rrs:RoseRS_1836 protein of unknown function DUF58.
  
 0.536
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.