STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_2959PFAM: peptidase C60 sortase A and B; KEGG: rrs:RoseRS_3119 peptidase C60, sortase A and B. (298 aa)    
Predicted Functional Partners:
Rcas_2921
KEGG: rrs:RoseRS_3193 hypothetical protein.
  
   
 0.768
Rcas_3536
KEGG: rrs:RoseRS_3713 hypothetical protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
     0.765
Rcas_1641
PFAM: PHP domain protein; AAA-4 family protein; SMART: phosphoesterase PHP domain protein; KEGG: rrs:RoseRS_1312 AAA-4 family protein.
  
     0.763
Rcas_3535
KEGG: rrs:RoseRS_3712 hypothetical protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
     0.763
Rcas_3432
PFAM: N-acetylmuramoyl-L-alanine amidase family 2; SMART: Animal peptidoglycan recognition protein PGRP; KEGG: rrs:RoseRS_1610 N-acetylmuramoyl-L-alanine amidase, family 2.
 
     0.749
Rcas_0707
KEGG: rrs:RoseRS_4351 hypothetical protein.
  
     0.748
Rcas_3670
KEGG: rrs:RoseRS_4040 hypothetical protein.
  
     0.744
Rcas_1417
PFAM: HEAT domain containing protein; PBS lyase HEAT domain protein repeat-containing protein; KEGG: rrs:RoseRS_3973 PBS lyase heat domain protein repeat-containing protein.
  
     0.743
Rcas_2671
N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD; PFAM: N-acetylmuramoyl-L-alanine amidase family 2; SMART: Animal peptidoglycan recognition protein PGRP; KEGG: rrs:RoseRS_3053 N-acetylmuramoyl-L-alanine amidase, family 2.
  
     0.739
Rcas_2723
KEGG: rrs:RoseRS_2654 hypothetical protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
     0.738
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.