STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_2982PFAM: electron transport protein SCO1/SenC; KEGG: rrs:RoseRS_2912 electron transport protein SCO1/SenC. (197 aa)    
Predicted Functional Partners:
Rcas_3558
Cytochrome c oxidase subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
 
 
 0.930
Rcas_1574
Cytochrome c oxidase subunit II; PFAM: blue (type 1) copper domain protein; cytochrome c oxidase subunit II; KEGG: rrs:RoseRS_0933 cytochrome c oxidase, subunit II.
 
 
 0.881
Rcas_0963
PFAM: protein of unknown function DUF461; KEGG: rrs:RoseRS_3482 protein of unknown function DUF461.
 
   
 0.837
Rcas_2981
KEGG: rrs:RoseRS_2911 hypothetical protein.
       0.815
Rcas_4444
PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: rrs:RoseRS_0760 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen.
 
 
 0.814
ctaB
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
  
 0.777
rpiA
Ribose 5-phosphate isomerase; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
  
    0.758
Rcas_2445
Hypothetical protein.
  
 
 0.753
Rcas_0176
KEGG: rrs:RoseRS_4581 hypothetical protein.
  
 
 0.731
Rcas_3573
KEGG: rrs:RoseRS_1366 hypothetical protein.
  
 
 0.731
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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