STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_2983PFAM: ferredoxin; KEGG: rrs:RoseRS_2914 ferredoxin. (124 aa)    
Predicted Functional Partners:
Rcas_2154
PFAM: protein of unknown function DUF407; KEGG: rrs:RoseRS_1453 hypothetical protein.
  
     0.596
Rcas_1801
PFAM: protein of unknown function DUF407; KEGG: rrs:RoseRS_2616 protein of unknown function DUF407.
  
     0.586
Rcas_1184
PFAM: protein of unknown function DUF442; KEGG: rrs:RoseRS_0813 protein of unknown function DUF442.
  
     0.526
Rcas_3878
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
    
 
 0.479
Rcas_0337
PFAM: beta-lactamase domain protein; KEGG: rrs:RoseRS_0062 beta-lactamase domain protein.
  
     0.463
Rcas_1971
PFAM: phospholipid/glycerol acyltransferase; KEGG: rrs:RoseRS_2705 phospholipid/glycerol acyltransferase.
  
     0.450
Rcas_1796
KEGG: rrs:RoseRS_2621 hypothetical protein.
  
     0.449
Rcas_2981
KEGG: rrs:RoseRS_2911 hypothetical protein.
       0.435
Rcas_2982
PFAM: electron transport protein SCO1/SenC; KEGG: rrs:RoseRS_2912 electron transport protein SCO1/SenC.
       0.435
rpiA
Ribose 5-phosphate isomerase; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
       0.424
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.